Publications

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2009
Malovini A, Nuzzo A, Ferrazzi F, Puca AA, Bellazzi R. "Phenotype forecasting with SNPs data through gene-based Bayesian networks." BMC Bioinformatics. 2009;10(Suppl 2):7.
Ferrazzi F, Diehl F, Patra C, et al. Temporal expression analysis to elucidate regulatory mechanisms of heart development. Vol. Clin Res Cardiol 98 Suppl 1.; 2009.
Patra C, Ferrazzi F, Amerongen VMJ, et al. The extracellular matrix protein nephronectin is required for zebrafish heart development. Vol. Clin Res Cardiol 98 Suppl 1.; 2009.
Novoyatleva T, Amerongen VMJ, Diehl F, Patra C, Ferrazzi F, Engel FB. TWEAK, via its FN14 receptor, is a novel positive regulator of cardiomyocyte proliferation. Vol. Clin Res Cardiol .; 2009.
Avogadri R, Brioschi M, Ferrazzi F, Re M, Beghini A, Valentini G. "A stability-based algorithm to validate hierarchical clusters of genes." International Journal of Knowledge Engineering and Soft Data Paradigms. 2009;1(4):381-30.
2008
Malovini A, Ferrazzi F, Nuzzo A, Puca AA, Bellazzi R. Learning Bayesian networks from genotypic data for phenotype forecasting: a gene-based approach. Pisa, Italy; 2008.
Malovini A, Ferrazzi F, Nuzzo A, Puca AA, Bellazzi R. Phenotype Forecasting with SNPs Data through Gene-Based Bayesian Networks. Varenna (CO), Italy; 2008.
Malovini A, Ferrazzi F, Nuzzo A, Puca AA, Bellazzi R. Learning Gene-based Bayesian Networks from SNPs Data for Phenotype Forecasting. San Francisco, CA, USA; 2008.
Ferrazzi F, Rinaldi S, Bellazzi R. Prior knowledge in the inference of cellular networks with dynamic Gaussian networks: results from a simulation study.; 2008.
Ferrazzi F, Rinaldi S, Parikh A, Shaulsky G, Zupan B, Bellazzi R. Population models to learn Bayesian networks from multiple gene expression experiments.; 2008.
Ferrazzi F, Diehl F, Patra C, et al. Systems Biology Approach to Elucidate Fundamental Mechanisms of Heart Growth and Maturation. Vol. 103.; 2008. Basic Cardiovascular Sciences Conference 2008 Abstracts, Circulation Research 103.
Ferrazzi F, Rinaldi S, Parikh A, Shaulsky G, Zupan B, Bellazzi R. Bayesian population models to learn gene networks from multiple expression experiments.; 2008. Proceedings of ECCB 2008 European Conference on Computational Biology.
Avogadri R, Brioschi M, Ruffino F, Ferrazzi F, Beghini A, Valentini G. An algorithm to assess the reliability of hierarchical clusters in gene expression data..; 2008. Proceedings of KES 2008, 12th International Conference on Knowledge-Based and Intelligent Information & Engineering Systems, Lecture Notes in Computer Science.
Magni P, Ferrazzi F, Sacchi L, Bellazzi R. "TimeClust: a clustering tool for gene expression time series." Bioinformatics. 2008;24(3):430-432.
2007
Ferrazzi F, Magni P, Sacchi L, Nuzzo A, Petrovic U, Bellazzi R. "Inferring gene regulatory networks by integrating static and dynamic data." International Journal of Medical Informatics. 2007;76(Suppl 3):S462-75.
Ferrazzi F, Sebastiani P, Ramoni MF, Bellazzi R. "Bayesian approaches to reverse engineer cellular systems: a simulation study on nonlinear Gaussian networks." BMC Bioinformatics. 2007;8 (Suppl 5).
Bellazzi R, Ferrazzi F, Sacchi L. "Metodi avanzati per il clustering di dati di espressione genica: integrazione di conoscenza a priori e analisi di serie temporali." In: Bellazzi R, Bicciato S, Cavalcanti S, Cobelli C, Toffolo G, eds.; 2007.
Ferrazzi F, Bellazzi R. "Control and Systems Fundamentals." In: Alterovitz G, Ramoni MF, eds.; 2007.
Ferrazzi F, Rinaldi S, Bellazzi R. The role of prior knowledge to reconstruct cellular networks with Bayesian networks: a simulation study.; 2007.
2006
Ferrazzi F, Amici R, Sebastiani P, Kohane IS, Ramoni MF, Bellazzi R. Can we use Linear Gaussian Networks to Model Dynamic Interactions Among Genes?.; 2006.
Ferrazzi F, Magni P, Sacchi L, Bellazzi R. Inferring gene expression networks through static and dynamic data integration. Vol. 124. Hasman A, Haux R, van der Lei J, Clercq DE, France RFH, eds.; 2006.
Ferrazzi F, Sebastiani P, Kohane IS, Ramoni MF, Bellazzi R. Dynamic Bayesian Networks in Modelling Cellular Systems: a Critical Appraisal on Simulated Data.. Lee D, Nutter B, Antani S, Mitra S, Archibald J, eds.; 2006.
Ferrazzi F, Sebastiani P, Bellazzi R, Kohane IS, Ramoni MF. Identification of Feedback Structures from Gene Expression Time Series..; 2006.
Ferrazzi F, Sebastiani P, Kohane IS, Ramoni MF, Bellazzi R. Bayesian approaches for reverse engineering of cellular networks: a performance evaluation on simulated data..; 2006.
Ferrazzi F, Sebastiani P, Bellazzi R, Kohane IS, Ramoni MF. A Bayesian Approach to Identify Feedback Loops in Gene Regulation..; 2006.